Research AI Platform

AI-Assisted Brain Tumor MRI Analysis

A research-oriented platform for automated segmentation and quantitative analysis of tumor regions from multi-sequence brain MRI.

Upload MRI Study

Select all MRI volumes belonging to one study. The system automatically identifies T1, contrast-enhanced T1, T2 and FLAIR from supported filename conventions.

⬆
Select Complete MRI Study

Click here or drag and drop the MRI NIfTI files.

Supported formats: .nii and .nii.gz

T1 MRI
T1 Contrast-Enhanced
T2 MRI
FLAIR MRI

Analysis Results

Whole Tumor (WT)

-
cm³

Tumor Core (TC)

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cm³

Enhancing Tumor (ET)

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cm³
Model-
API version-
Temporary retention-

Experimental Glioma Grade-Risk Estimate

Predicted MRI pattern -
Confidence -
Higher-grade probability -
Lower-grade probability -

Downloads

Interactive MRI Segmentation Viewer

Switch between MRI sequences, change the viewing plane and adjust the tumor-overlay opacity while inspecting the same predicted segmentation.

MRI sequence
View
Overlay opacity 55%
Mouse wheel: move through slices. Drag according to the viewer mode to inspect the volume. Use the buttons above to change MRI sequence or orientation.
WT - Whole Tumor TC - Tumor Core ET - Enhancing Tumor
Temporary data handling

Uploaded MRI volumes and generated results are temporarily retained for up to 6 hours and can be deleted immediately after use.

Research-use system. The displayed regions and volumes are model predictions. They do not constitute an independent medical diagnosis.

How the System Works

The platform combines automated MRI study recognition, deep-learning segmentation, quantitative tumor analysis and interactive visualization.

1

MRI Acquisition

Four complementary MRI sequences are supplied for the same study.

2

Study Recognition

The platform identifies and validates T1, T1ce, T2 and FLAIR volumes.

3

AI Segmentation

The MRI Deployment Model predicts tumor-region masks from four MRI channels.

4

Analysis

Tumor volumes, masks, a PDF report and interactive overlays are produced.

MRI Information Used by the Model

T1

Provides detailed anatomical information about brain structure.

T1ce

Contrast-enhanced T1 can highlight actively enhancing tumor tissue.

T2

Provides sensitivity to fluid-rich tissue and abnormalities.

FLAIR

Suppresses normal fluid signal and highlights many abnormal brain regions.

End-to-End Processing Pipeline

MRI StudyT1 + T1ce + T2 + FLAIR
→
Input ValidationSequence recognition, same-study and geometry checks
→
PreprocessingNonzero normalization and multi-channel preparation
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MRI Deployment ModelDeep-learning inference
→
OutputsWT, TC, ET masks, volumes, experimental grade-risk estimate, PDF report and viewer

Predicted Tumor Regions

Whole Tumor - WT

The broadest predicted tumor-associated region.

Tumor Core - TC

The predicted central tumor component within the whole-tumor region.

Enhancing Tumor - ET

The predicted contrast-enhancing tumor component.

Model Performance

Performance was measured on a held-out reference evaluation cohort and separately on an external cohort to assess generalization.

Reference Test Performance

Whole Tumor0.8898
Tumor Core0.7829
Enhancing Tumor0.7953
Mean Dice0.8227

External Generalization Performance

Whole Tumor0.8455
Tumor Core0.7021
Enhancing Tumor0.7707
Mean Dice0.7728

Dice measures spatial overlap between predicted and reference masks. These cohort-level values are not probabilities that an individual patient has cancer. Dataset provenance and experimental protocols remain documented in the research study.

How the AI Model Was Developed

Additional multimodal information is used during research training while the deployed system remains MRI-only.

Research Training
MRI + Clinical TextRich multimodal training information
→
Multimodal Training ModelLearns jointly from imaging and text
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Knowledge TransferSoft predictions provide an additional learning signal
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MRI Deployment ModelLearns to operate without clinical text

Real-World Inference
Patient MRIT1 + T1ce + T2 + FLAIR
→
MRI Deployment ModelNo clinical-text input is required
→
Tumor AnalysisSegmentation masks, volumes and visualization

Experimental controls showed no advantage over matched supervised fine-tuning on the reference test cohort, while evidence of improved external robustness was observed, particularly for enhancing-tumor segmentation.

Current System Capabilities

What the System Can Do

  • Automatically organize supported multi-sequence MRI studies.
  • Segment Whole Tumor, Tumor Core and Enhancing Tumor.
  • Estimate tumor-region volumes.
  • Provide an experimental glioma lower-grade/higher-grade MRI-pattern estimate when a full supported study is available.
  • Display MRI and segmentation overlays.
  • Export masks and a PDF analysis report.

Caution

AI-generated results should be reviewed and interpreted by a qualified healthcare professional before any clinical decision is made. The system is intended to support analysis and should not replace professional medical judgment.

Research and decision-support use only. TPR-BraTS is an experimental AI platform and has not been established as an independent clinical diagnostic system.
Atta Yaw Agyeman
Designed and developed by:

Atta Yaw Agyeman

Speciality: Data Scientist